citHeader("Please cite the top for the original statistical method and normalization method implemented in metagenomeSeq and the bottom for the software/vignette guide. Time series analysis/function is described in the third citation.")

citEntry(entry="article",
         title = "Differential abundance analysis for microbial marker-gene surveys",
         author = personList( as.person("Joseph N. Paulson"), 
                              as.person("Oscar Colin Stine"),
                              as.person("Hector Corrada Bravo"),
                              as.person("Mihai Pop")),
         year = 2013,
         journal = "Nat Meth",
         volume = "advance online publication",
         pages = "",
         doi = "10.1038/nmeth.2658",
         url = "http://www.nature.com/nmeth/journal/vaop/ncurrent/abs/nmeth.2658.html",
         textVersion = 
         paste("JN Paulson, OC Stine, HC Bravo, M Pop. ", 
               "Differential abundance analysis for microbial marker-gene surveys.",
	"Nat Meth", "Accepted" ) )

citEntry(entry="manual",
         title = "metagenomeSeq: Statistical analysis for sparse high-throughput sequncing.",
         author = personList( as.person("Joseph N. Paulson"), 
                              as.person("Mihai Pop"),
                              as.person("Hector Corrada Bravo")),
         year = 2013,
         note = "Bioconductor package",
         url = "http://www.cbcb.umd.edu/software/metagenomeSeq",
         
         textVersion = 
         paste("JN Paulson, H Talukder, M Pop, HC Bravo. ", 
               "metagenomeSeq: Statistical analysis for sparse high-throughput sequencing. ",
               "Bioconductor package: ", packageVersion("metagenomeSeq"), ". http://cbcb.umd.edu/software/metagenomeSeq",sep="") )

citEntry(entry="article",
         title = "Longitudinal differential abundance analysis of marker-gene surveys",
         author = personList( as.person("Hisham Talukder*"),
                              as.person("Joseph N. Paulson*"),
                              as.person("Hector Corrada Bravo")),
         year = "2014",
         journal = "XX",
         volume = "",
         pages = "",
         doi = "",
         url = "",
         textVersion =
         paste("H Talukder*, JN Paulson*, HC Bravo.",
               "Longitudinal differential abundance analysis of marker-gene surveys.",
        "Submitted") 
)

